Hello.
I am implementing my pipeline and I have to start the steps after alignment. I have see on GATK pipeline that I have to do local realignment (indel realignment) but the problem of 454 Roche is the homopolymer, so I would like know if there is an other tool that I have to use.
Thank you in advance
I am implementing my pipeline and I have to start the steps after alignment. I have see on GATK pipeline that I have to do local realignment (indel realignment) but the problem of 454 Roche is the homopolymer, so I would like know if there is an other tool that I have to use.
Thank you in advance