I've been using Tophat version 2.0.6 for a while and it seemed to work fine. However, today I wanted to use the insertions.bed and deletions.bed files but these files seemed to be empty after Tophat has finished. In previous versions of Tophat it worked fine.
Does anyone experience the same problem or does anybody know how to fix this problem?
Does anyone experience the same problem or does anybody know how to fix this problem?
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