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Discussion of next-gen sequencing related bioinformatics: resources, algorithms, open source efforts, etc

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Closed, Sticky: New Resources for 1000 Genomes by laura
Started by laura, 05-09-2011, 04:42 AM
35 responses
108,292 views
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 Last Post laura
by laura
12-05-2013, 02:37 AM  
Closed, Sticky: Software packages for next gen sequence analysis by sci_guy
Started by sci_guy, 01-23-2008, 11:19 PM
236 responses
690,261 views
1 reaction
 Last Post ECO
by ECO
12-25-2009, 06:45 PM  
Questions running Delly to detect copy number variation by mavershang
Started by mavershang, 12-05-2014, 06:22 AM
0 responses
1,629 views
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 Last Post mavershang
by mavershang
12-05-2014, 06:22 AM  
mirDeep2 mapper.pl is making an empty reads_collapsed_vs_genome.arf file - help?! by jmccreig
Started by jmccreig, 06-06-2014, 11:42 AM
3 responses
4,985 views
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 Last Post BioRyder
by BioRyder
12-05-2014, 04:28 AM  
ENSEMBL biotype tRNA and non-coding RNA by hanshart
Started by hanshart, 05-17-2013, 04:14 AM
1 response
3,684 views
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 Last Post sudders
by sudders
12-05-2014, 02:49 AM  
"Re-inflating Partioned" Metagenomic Data - KHMER by roliwilhelm
Started by roliwilhelm, 04-30-2014, 02:41 PM
6 responses
7,072 views
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 Last Post cjfields
by cjfields
12-04-2014, 06:41 PM  
RepeatMasker and BLAST by andreanna05
Started by andreanna05, 12-04-2014, 03:33 PM
1 response
2,920 views
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 Last Post Brian Bushnell
by Brian Bushnell
12-04-2014, 05:23 PM  
vcf file snp frequencies by susanklein
Started by susanklein, 12-04-2014, 02:26 PM
2 responses
2,252 views
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 Last Post susanklein
by susanklein
12-04-2014, 04:08 PM  
VCF file - 'X' bases in the ALT position and QUAL = 0 . Why ? by north_zeb
Started by north_zeb, 06-04-2013, 08:37 AM
3 responses
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 Last Post sunnycqcn
by sunnycqcn
12-04-2014, 02:58 PM  
NGSPipeline::Pipeline::Mapping by AnushaC
Started by AnushaC, 12-04-2014, 12:38 PM
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 Last Post AnushaC
by AnushaC
12-04-2014, 12:38 PM  
visualize alternative splicing from cufflink output gtf file by lzu
Started by lzu, 12-05-2013, 01:26 AM
3 responses
3,426 views
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 Last Post anibhax
by anibhax
12-04-2014, 12:10 PM  
circos input data by bsp017
Started by bsp017, 11-27-2014, 06:35 AM
5 responses
4,602 views
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 Last Post bsp017
by bsp017
12-04-2014, 11:03 AM  
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